![GitHub - rcedgar/muscle: Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures. GitHub - rcedgar/muscle: Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.](http://drive5.com/images/muscle5_header.jpg)
GitHub - rcedgar/muscle: Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
![Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny | Nature Communications Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny | Nature Communications](https://media.springernature.com/m685/springer-static/image/art%3A10.1038%2Fs41467-022-34630-w/MediaObjects/41467_2022_34630_Fig1_HTML.png)
Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny | Nature Communications
![MUSCLE: a multiple sequence alignment method with reduced time and space complexity | BMC Bioinformatics | Full Text MUSCLE: a multiple sequence alignment method with reduced time and space complexity | BMC Bioinformatics | Full Text](https://media.springernature.com/m685/springer-static/image/art%3A10.1186%2F1471-2105-5-113/MediaObjects/12859_2004_Article_229_Fig7_HTML.jpg)